BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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CS-Rosetta Results Access

Results for submission SAFB2_RRM.

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Graph for SAFB2_RRM

This run appears to have converged (based on the residues marked non-flexible). That means that the results may be a meaningful prediction of the real structure. Please validate the structure against your experimental data.

Lowest energy structure: S_01528

RMSD against lowest energy structure for all residues

Structure Score
S_01528.pdb 0.9265
S_01722.pdb 0.8711
S_01023.pdb 1.2958
S_02136.pdb 1.0573
S_02446.pdb 1.2708
S_01324.pdb 2.0910
S_01249.pdb 1.9535
S_00627.pdb 1.3733
S_01224.pdb 2.4095
S_02573.pdb 2.2593
Averaged Ca-rmsd 1.551 +/- 0.574

RMSD against lowest energy structure for residues 2-85

Structure Score
S_01528.pdb 0.9025
S_01722.pdb 0.8226
S_01023.pdb 1.2909
S_02136.pdb 1.0271
S_02446.pdb 1.2244
S_01324.pdb 2.0869
S_01249.pdb 1.9222
S_00627.pdb 1.2772
S_01224.pdb 2.4210
S_02573.pdb 2.2629
Averaged Ca-rmsd 1.524 +/- 0.592

This entry was calculated with Rosetta version 3.8 and version 3.3 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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